Main Conference

November 20, 2018

Catia Pesquita (University of Lisbon, Portugal)

"Do Scaling Algorithms Preserve Word2Vec Semantics? A Case Study for Medical Entities."
Janus Wawrzinek, José María González Pinto, Philipp Markiewka and Wolf-Tilo Balke.

"Combining semantic and lexical measures to evaluate medical terms similarity."
Silvio Cardoso, Marcos Da Silveira, Ying-Chi Lin, Victor Christen, Erhard Rahm, Chantal Reynaud and Cédric Pruski.

"Construction and Visualization of Dynamic Biological Networks: Benchmarking the Neo4J Graph Database."
Lena Wiese, Chimi Wangmo, Lukas Steuernagel, Armin O. Schmitt and Mehmet Gültas.

"Towards research infrastructures that curate scientific information: A use case in life sciences."
Markus Stocker, Manuel Prinz, Fatemeh Rostami and Tibor Kempf.

"Converting Alzheimer’s disease map into a heavyweight ontology: a formal network to integrate data."
Vincent Henry, Ivan Moszer, Olivier Dameron, Marie-Claude Potier, Martin Hofmann-Apitius and Olivier Colliot.

"Interactive Visualization for large-scale multi-factorial Research Designs."
Andreas Friedrich, Luis de la Garza, Oliver Kohlbacher and Sven Nahnsen.

Posters

"Data Integration for Supporting Biomedical Knowledge Graph Creation at Large-Scale."
Samaneh Jozashoori, Tatiana Novikova and Maria-Esther Vidal.

"Knowledge Graph Completion to Predict Polypharmacy Side Effects."
Brandon Malone, Alberto Garcia-Duran and Mathias Niepert.

"A Knowledge-driven Pipeline for Transforming Big Data into Actionable Knowledge."
Maria-Esther Vidal, Kemele M. Endris, Samaneh Jozashoori and Guillermo Palma.    

Demos

"FedSDM: Semantic Data Manager for Federations of RDF Datasets."
Kemele M. Endris, Maria-Esther Vidal and Sören Auer.

"User-Driven Development of a Novel Innovative Molecular Tumor Board Support Tool."
Marc Halfmann, Holger Stenzhorn, Peter Gerjets, Oliver Kohlbacher and Uwe Oestermeier. 

"Using Semantic Programming for developing a Web Content Management System for semantic Phenotype Data."
Lars Vogt, Roman Baum, Köhler Christian, Meid Sandra, Quast Björn and Peter Grobe.

"DISBi: A flexible framework for integrating systems biology data."
Rüdiger Busche, Henning Dannheim and Dietmar Schomburg.

November 21, 2018

Alfred Pühler (Bielefeld University, Germany)

"Using Machine Learning to Distinguish Infected from Non-Infected Subjects at an Early Stage Based on Viral Inoculation."
Ghanshyam Verma, Alokkumar Jha, Dietrich Rebholz-Schuhmann and Michael G. Madden.

"Automated Coding of Medical Diagnostics from Free-Text: the Role of Parameters Optimization and Imbalanced Classes."
Luiz Virginio and Júlio César Dos Reis.

"A learning-based approach to combine medical annotation results."
Victor Christen, Ying-Chi Lin, Anika Groß, Silvio Domingos Cardoso, Cédric Pruski, Marcos Da Siveira and Erhard Rahm.

"The Hannover Medical School Enterprise Clinical Research Data Warehouse: 5 years of experience." Svetlana Gerbel, Hans Laser, Norman Schönfeld and Tobias Rassman.

"Lung Cancer Concept Annotation from Spanish Clinical Narratives."
Marjan Najafabadipour, Juan Manuel Tuñas, Alejandro Rodriguez and Ernestina Menasalvas.

"Leaving no stone unturned: Using machine learning based approaches for information extraction from full texts of a research data warehouse."
Johanna Fiebeck, Hans Laser and Svetlana Gerbel.

"Linked Data based Multi-Omics Integration and Visualization for Cancer Decision Networks."
Alokkumar Jha, Yasar Khan, Qaiser Mehmood, Dietrich Rebholz-Schuhmann and Ratnesh Sahay.